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Building better blackberries

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The Human Genome Project is one of the greatest scientific feats in history.  It was launched in 1990 and completed in 2003.  The international group of researchers wanted to comprehensively study all of the DNA – the genome – from a select set of organisms, foremost of which being that of human beings.  The results accelerated the study of human biology and has led to improvements in the practice of medicine.

Every living thing – animal, plant, fungus, and various single-celled organisms – has a genome – a genetic blueprint.  A recent study by researchers at the University of Florida has done genome sequencing of blackberries with the hope of being able to achieve more efficient and targeted breeding.

Over the past 20 years, consumer demand for blackberries has increased leading to farmers growing more of the fruit in the United States.  The U.S. produces 37 million pounds of processed blackberries and almost 3 million pounds of fresh berries each year.

The Florida researchers made use of a large collection of DNA sequences to computationally piece together the entire genome of the blackberry variety in the study.  The genome study uncovered the secrets behind key traits that could lead to growing blackberry plants with no thorns and increasing the production of anthocyanin, which affects the color and health benefits of the fruit. 

For Florida, the southeastern United States and regions with similar climates, the genetic research holds the promise of accelerating the process to create blackberry varieties that are better suited to local growing conditions, enhancing both the yield and the quality of the increasingly popular fruit.

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Decoding blackberry DNA: UF study paves way for enhanced breeding strategies

Photo, posted September 18, 2016, courtesy of Theo Crazzolara via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Finding peatlands

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Peatlands are a special kind of wetland that have enormous potential for helping to mitigate climate change.  They are great at capturing carbon because their constantly soggy soils deprive decomposer organisms of the oxygen they need to break down dead plants.  Living plants absorb carbon dioxide from the atmosphere and incorporate the carbon into their tissues.  When plants die, decomposers like bacteria digest the plant matter and release the carbon dioxide back into the atmosphere.

Researchers from the University of California Santa Cruz found that the average per-area carbon densities in peatlands in Colombia are four to ten times higher than those in the Amazon rainforest.  This agrees with other studies around the world.  On a global scale, peatlands cover only 3% of land areas but store more carbon than all the world’s trees.  Peatlands are unsung heroes helping to reduce the impact of fossil fuel emissions.

Peatlands can only store carbon if they remain constantly wet.  When they are drained for agriculture or other development, decomposer organisms get back to work digesting organic matter and releasing carbon dioxide back into the atmosphere.

A major challenge in protecting peatland is finding them.  They are often hard to distinguish from other types of wetlands. 

The Santa Cruz researchers have been identifying and locating peatlands in Colombia, where decades of civil war had made many parts of the country inaccessible for research.  Finding and protecting peatlands there and in many other places around the world is an important task in the battle against climate change.

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Colombia’s peatlands could be a crucial tool to fight climate change. But first we have to find them.

Photo, posted January 2, 2018, courtesy of Roni Ziade / U.S. Forest Service via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Removing microplastics from water

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Microplastics come from the breakdown of larger plastics in the environment as well as from direct use in various products such as certain cosmetics.  They are found everywhere, from oceans and mountain peaks to the air and water, and alarmingly, in our bodies.  They are ingested by all sorts of organisms, from tiny plankton to fish and marine mammals.  Microplastics just don’t go away.  They don’t biodegrade so they simply accumulate in the environment.

Researchers at North Carolina State University have recently demonstrated proof of concept for a system that actively removes microplastics from water.  Such a system has the potential for helping to cleanse oceans and other bodies of water from the tiny plastic particles.

The system makes use of soft dendritic colloids, which are tiny particles that have the ability to stick to just about any surface.  These sticky particles can attract microplastics and grab them, even in wet and salty conditions.  The colloids are made from chitosan, a harmless and biodegradable polymer made from processed shellfish waste.

The researchers produced small pellets of the colloids that also contain small amounts of magnesium, which makes them bubble up and rise to the surface of water.  The pellets are coated with a gelatin layer, which blocks the magnesium.  As the gelatin gradually dissolves away, the pellets collect microplastics.  Eventually, the result is a microplastic-laden scum that rises to the surface where it can be skimmed away.

The scum itself can be bioprocessed into more chitosan that can create more of these microcleaner pellets to then capture more microplastics.  The researchers are investigating how the process can be scaled up to become a valuable tool in dealing with the microplastics problem.

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New Water Microcleaners Self-Disperse, Capture Microplastics and Float Up for Removal

Photo, posted January 17, 2018, courtesy of Bo Eide via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

The dangers of deep sea mining

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The White House is considering an executive order that would fast-track permitting for deep-sea mining in international waters and allow mining companies to bypass a United Nations-backed review process.

Deep sea mining is the extraction of minerals from the seabed in the deep ocean.  Most of the interest is in what are known as polymetallic nodules, which are potato-sized mineral deposits that have built up in layers over thousands of years. They are located several miles below the surface, primarily in what is called the Clarion-Clipperton zone, which is an environmental management area of the Pacific Ocean about halfway between Mexico and Hawaii.

A new multiyear study led by UK’s National Oceanography Center and published in the journal Nature found that the site of a deep-sea mining test in 1979 still showed lower levels of biodiversity than in neighboring undisturbed sites 44 years later.

Much is not known about the undersea nodules.  We know that they produce oxygen.  If the nodules are removed, will that reduce the amount of oxygen in the deep sea and affect the organisms that live there?  If mining occurs, what effect will the metal-containing sediment plumes churned up by the mining process have? 

The nodule fields sustain highly specialized animal and microbial communities.  More than 20 billion tons of nodules are estimated to lie on the seabed of the Clarion-Clipperton Zone.  If large-scale mining takes place, and there is much interest in that happening, it is important to find out what the impact will be on the ocean and its ecosystems because it is likely to be largely irreversible.

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Deep sea mining for rare metals impacts marine life for decades, scientists say

Photo, posted September 4, 2014, courtesy of James St. John via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Sequoias in Britain

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Giant sequoias are the most massive trees on earth.  They can grow as tall as nearly 300 feet and have trunk diameters from 20 to 26 feet.  They are also among the oldest living organisms on Earth; some of them are well over 3,000 years old.  The trees are native to the western slopes of the Sierra Nevada mountain range in California.

Lengthy droughts and wildfires have been pushing giant sequoias in California into decline.  Up to 20% of all large giant sequoias in California died in wildfires in 2020 and 2021.  There are estimated to be only about 80,000 remaining in the native groves in the Sierra Nevada.  These old-growth forests are very much in jeopardy and represent rare ecosystems of considerable ecological and historical value.

Giant sequoias have been planted in many places around the world.  They were introduced to country estates in Britain during the 19th century.  They were seen as symbols of wealth and power.  Over time, they have been widely planted in parks and woodlands.   As a result, there are now half a million giant sequoias growing in Britain and they are thriving there.

The British sequoias are rather young by sequoia standards, so they are relatively squat in stature.  The tallest of them measures about 180 feet.  But recent research, published in the journal Royal Society Science, found that in Britain’s cool and mild climate, the trees are growing nearly as fast as they do in California. 

The British sequoias are probably more important for their aesthetic and historical interest than their impact on the environment, but it is good to know they are there.

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Under Threat in Their Native California, Giant Sequoias Are Thriving in Britain

Photo, posted November 4, 2010, courtesy of John Buie via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Biosurfactants And Oil Spills | Earth Wise

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About 400 million gallons of oil leaks into the ocean every year.  This is a major source of environmental pollution.  Oil contains many hazardous compounds that are toxic or mutagenic for marine organisms. 

When oil spill incidents occur, large quantities of chemical dispersants, sometimes as much as millions of gallons, are applied to dissolve oil slicks, prevent oil from reaching coastlines, and enhance the dispersion of the oil in the water.  The hope for doing this is that microbial oil degradation will be enhanced as a result.  Certain microorganisms present in the water can feed on crude oil components and break them down into harmless substances.

A study at the University of Stuttgart in Germany in 2015 showed that chemical dispersants in fact can slow down microbial oil degradation and therefore inhibit water purification.  The oil components need to be broken down sufficiently for them to be bioavailable to microorganisms.  The study found that dispersants were not accomplishing this.

A new study by the same group along with researchers from the University of Tubingen in Germany and the University of Georgia has found that using biosurfactants rather than chemical dispersants stimulates different microbial oil degraders with respect to their growth and activity and can enhance our ability to deal with oil spills.   Treating the water with the biosurfactant rhamnolipid rather than any of the generally-used dispersants provided much higher rates of microbial breakdown of oil components.

The hope is that this work can lead to the development of effective and environmentally friendly approaches to combatting oil spills.

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Biosurfactants might offer an environmentally friendly solution for tackling oil spills

Photo, posted June 11, 2010, courtesy of Deepwater Horizon Response via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

What Is Healthy Soil? | Earth Wise

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Soil supports life by providing many critical ecosystem services.  For example, soil acts as a water filter, a growing medium, and provides habitat for billions of organisms.  Soil is also the foundation of our cities and towns, and the basis of global agroecosystems, which provide humans with feed, fiber, food, and fuel.

For all of these reasons and many more, having healthy soil is vital.  But what does soil health mean? And how should it be measured?

According to new analysis by researchers from Cranfield University and Nottingham University in the U.K., how we think about, measure, and study soil must change in order to better understand how to manage this resource effectively. 

While the term ‘soil health’ is widely used, it means different things to different people.  There is no single agreed upon way to gauge the overall health of soil. 

Current approaches to assess soil health measure individual soil properties and use findings  to assign a single number giving an overall score.  But according to the research team, this does not reflect the wider system perspective that’s needed to fully evaluate the health of soil over time.

Instead, the researchers propose a new system to assess soil health based on a hierarchical framework that takes in several measures, including signs of life, signs of function, signs of complexity, and signs of emergence, which is the extent to which soils recover from multiple stressors. 

This new approach, which can be applied to all soils, moves us closer to an interdisciplinary understanding of the whole picture of soil health.  After all, healthy soil is fundamental to our survival.

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We need to change how we think about soil

Photo, posted April 8, 2008, courtesy of Brian Boucheron via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Progress On Artificial Photosynthesis | Earth Wise

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Photosynthesis is the process by which plants use the energy from sunlight to turn water and carbon dioxide into biomass and ultimately the foods we and other organisms eat.  Scientists at the University of California Riverside and the University of Delaware have found a way to create food from water and carbon dioxide without using biological photosynthesis and without needing sunlight.

The research, recently published in the journal Nature Food, uses a two-step electrocatalytic process to convert carbon dioxide, electricity, and water into acetate, which is the primary component of vinegar.   Food-producing microorganisms then consume the acetate in order to grow.   Solar panels are used to generate the electricity to power the electrocatalysis.  The result is a hybrid organic-inorganic system that is far more efficient in converting sunlight into food than biological photosynthesis.

The research showed that a wide range of food-producing organisms can be grown in the dark directly on the acetate output of the electrolyzer.  These include green algae, yeast, and the fungal mycelium that produce mushrooms.   Producing algae with this technology is about 4 times more energy efficient than growing it with photosynthesis.  Yeast production is about 18 times more energy efficient than the typical method of cultivating it using sugar extracted from corn.

Artificial photosynthesis has the potential to liberate agriculture from its complete dependence on the sun, opening the door to a wide range of possibilities for growing food under the increasingly difficult conditions imposed by the changing climate.

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Artificial photosynthesis can produce food without sunshine

Photo, posted September 7, 2016, courtesy of Kevin Doncaster via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Environmental DNA | Earth Wise

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Marine protected areas are sections of the ocean where governments place limits on human activity.  They are intended to provide long-term protection to important marine and coastal ecosystems.  MPAs are important because they can protect depleted, threatened, rare, and endangered species and populations.

In January 2020, the Republic of Palau in the western Pacific Ocean created one of the world’s largest marine protected areas.  The Palau National Marine Sanctuary covers 80% of the country’s economic zone and prohibits all extractive activity like fishing and mining over a 183,000 square mile area in order for the island nation to ensure its food security and grow its economy in the face of climate change.

The Marine Sanctuary is an ambitious enterprise.  The question is how Palau can evaluate whether and how well it is working?

A team of scientists from Stanford University and Palau-based colleagues are making use of Environmental DNA – or eDNA – technology to monitor the large-scale marine protected area.  eDNA is the cells, waste, viruses, and microorganisms that plants and animals leave behind.  Samples of marine eDNA effectively provide a fingerprint of the organisms that have recently passed through the water in a given area.  This gives scientists a way to assess an ecosystem’s biodiversity and keep track of the types of species inhabiting a specific area.  Using eDNA, it is possible to keep track of all the  organisms that live below the surface and learn about things we can’t even see.

The team has embarked on a program of periodic sampling of the waters off Palau and hope to be able to monitor the results of establishing the Marine Sanctuary.

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eDNA: Bringing biodiversity to the surface

Photo, posted June 12, 2013, courtesy of Gregory Smith via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Less Phytoplankton In The Gulf Of Maine | Earth Wise

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Phytoplankton, also known as microalgae, are the base of the marine food web and also play a key role in removing carbon dioxide from the air.  They are eaten by primary consumers like zooplankton, small fish, and crustaceans. 

Phytoplankton, like land plants, absorb carbon dioxide from the atmosphere and use photosynthesis to grow.  Then they become a food source for other organisms and ultimately for people who depend upon marine ecosystems.   If phytoplankton productivity is disrupted, there can be adverse effects on regional fisheries and the communities that depend on them.

The Gulf of Maine is becoming warmer and saltier, because of ocean currents pushing warm water into the gulf from the Northwest Atlantic.  These temperature and salinity changes have led to a significant decrease in the productivity of phytoplankton.   According to a new paper from scientists at Bigelow Laboratory of Ocean Sciences in Maine, phytoplankton are about 65% less productive in the gulf than they were 20 years ago.

The study’s results come from the analysis of the Gulf of Maine North Atlantic Time Series, a 23-year sampling program of the temperature, salinity, chemical, biological, and optical measurements of the gulf.  The scientists refer to what they describe as a giant windmill effect happening in the North Atlantic, which is changing the circulation of water coming into the Gulf of Maine.  In the past, inflows from the North Atlantic brought water from the Labrador Current, which made the gulf cooler and fresher.  The new circulation is making the water warmer and saltier.

These changes have significant implications for higher marine species, fisheries, the lobster industry, and other activities in the states that border the Gulf of Maine.

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NASA-funded Study: Gulf of Maine’s Phytoplankton Productivity Down 65%

Photo, posted November 15, 2015, courtesy of Paul VanDerWerf via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Tourism And Invasive Species | Earth Wise

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Tourism has experienced exponential growth during the past 70 years.  In 1950, there were 25 million international tourist arrivals.  By 1990, it had ballooned to 435 million.  Between 1990 and 2018, the numbers more than tripled reaching more than 1.4 billion.  And by 2030, the number of international tourist arrivals is expected to reach 1.8 billion.

Tourism is vital to the success of many economies around the world.  Tourism can boost revenue, provide jobs, develop infrastructure, protect wildlife, and help preserve heritage sites and cultures.  But there can also be many downsides to tourism, one of which is that it can contribute to the introduction and spread of invasive species.  Non-native organisms can cause all sorts of social, environmental, and economic damage.   

Tourists help spread invasive organisms far and wide.  These organisms hitch rides in their luggage and on their shoes and clothing.  A 2011 study in New Zealand found that for every gram of soil on the shoes of in-bound international passengers, there were 2.5 plant seeds, 41 roundworms, 0.004 insects and mites, and many microorganisms. 

A new study by researchers from the University of Melbourne in Australia and AgResearch New Zealand examined to what degree tourism plays a role in the spread of invasive species.  According to the study, which was recently published in the journal NeoBiota, the research team found that the number of nights spent in hotels significantly correlated to the incursion of invasive species during that period.

Creating effective mechanisms to prevent the introduction of invasive species in the first place is the best way to prevent this problem. 

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Unwelcome guests: International tourism and travel can be a pathway for introducing invasive species

Number of tourist arrivals

Photo, posted March 27, 2005, courtesy of John via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Butterflies And Moths In A Changing World | Earth Wise

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Extinction is a part of life.  Plant and animal species disappear all the time.  In fact, approximately 98% of all the organisms that have ever existed on planet earth are now extinct. Earth’s so-called ‘normal’ rate of extinction is thought to be somewhere between 0.1 and 1 species per 10,000 species per 100 years. 

But anthropogenic climate change is bringing about rapid change in nature. Put more simply, human activity is killing nature at an unprecedented rate.  According to many scientists, the earth’s sixth mass extinction has already begun. Mass extinctions are defined as times when the Earth loses more than 75% of its species in a geologically short interval.

The changing climate puts immense pressure on species for change.  According to a new study by researchers from the University of Helsinki and the Finnish Environment Institute, the few butterfly and moth species capable of adjusting to the changing climate by moving up their flight period and moving further north have fared the best.

In Finland, researchers compared temporal shifts in the flight period and spatial shifts in the northern range boundary of 289 moth and butterfly species, as well as changes in abundance over a roughly 20-year period.

They found that about 45% of species that either moved northward or advanced their flight period fared much better than the roughly 40% of species that did not respond in either way.  On average, the populations of these poorly responding species declined.  But the 15% of species that did both had the largest increase in abundance. 

The ability to adapt to a changing climate is going to be vital for species survival. 

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Butterflies and moths have difficulty adjusting to a rapidly changing climate

What is mass extinction and are we facing a sixth one?

Photo, posted August 16, 2017, courtesy of Tero Laakso via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Tropical Species Moving North | Earth Wise

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Climate change is leading to warmer winter weather throughout the southern U.S., providing opportunities for many tropical plants and animals to move north.  A new study by scientists at UC Berkeley looked at the changing distribution of tropical species driven by the warming climate.

Some species are appreciated in their new locations, such as sea turtles and the Florida manatee, which are gradually moving northward along the Atlantic Coast.  Others, like the invasive Burmese python are not so welcome.  That goes double for many insects, such as the mosquitoes that carry diseases like the West Nile virus, Zika, dengue, and yellow fever, as well as beetles that destroy native trees.

The transition zone, northward of which experiences freezes every winter, has always been a barrier to species native to more temperate places.  For most organisms in such places, if they freeze, they die.  Cold snaps like the recent one in Texas usually don’t happen for decades and are now likely to be less and less frequent.  In the meantime, tropical species can get more and more of a foothold and maybe even develop populations that can tolerate more cold extremes in the future.

The warming climate is leading many plant species to expand their ranges, in some cases pushing out native species.  The general story is that the species that do really well are the more generalist species whose host plants or food sources are quite varied or widely distributed and can tolerate a wide range of conditions.  By definition, they tend to be the pest species.

We need to prepare for widespread shifts in the distribution of biodiversity as climate, including winter climate, changes.

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Tropical species are moving northward as winters warm

Photo, posted May 7, 2010, courtesy of Jim Reid / USFWS via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Microplastic Hotspots In The Ocean | Earth Wise

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Many of us are aware of the infamous ocean “garbage patches” of floating plastic.  The Great Pacific Garbage Patch is roughly the size of Texas.  But over 10 million tons of plastic waste enter the oceans each year and the floating patches only account for 1% of that total.  The remaining 99% of the plastic ends up in the deep ocean, generally in the form of microplastics – tiny fragments of large plastic debris that have broken down as well as manufactured polyethylene beads used in various products.

According to a new study published in the journal Science, there are actually microplastic hotspots on the ocean floor, formed by deep-sea currents that act as conveyer belts moving the tiny plastic fragments around.  One of these hotspots – in the Tyrrhenian Sea off the west coast of Italy – contained 1.9 million microplastic pieces in just one square meter of seafloor.  This is the highest reported value for any place in the world.

Because of their small size, microplastics can be ingested by organisms across all levels of the marine food chain and eventually find their way into human diets. 

The spatial distribution and ultimate fate of ocean microplastics are strongly controlled by near-bed thermohaline currents.  These are deep-ocean currents driven by differences in water density, which is controlled by temperature and salinity.  Thermohaline currents are known to supply oxygen and nutrients to the flora and fauna found at the ocean bottom.  As a result, deep sea biodiversity hotspots are likely to be in same places where there are microplastic hotspots.

The discovery of these deep- sea hotspots is just another reason why we need behavior and policy interventions to limit the flow of plastics into natural environments.

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Seafloor microplastic hotspots controlled by deep-sea circulation

Photo, posted September 6, 2012, courtesy of Oregon State University via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Climate Change And Dolphins

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We don’t think of heatwaves as something that affects the ocean, but increasingly, as the planet warms, there have been instances where ocean water temperatures become much higher than normal for extended periods of time.  There has been much discussion of this phenomenon with regard to coral reefs where the catastrophic rise in coral bleaching events has been the result.

Recently, a study at the University of Zurich looked at the effects of ocean heatwaves on marine life higher in the food chain.  They studied the well-known dolphin population in Shark Bay, Western Australia.

In early 2011, a heatwave caused water temperatures in Shark Bay to rise more than 4 degrees above the annual average for an extended period.  This led to a substantial loss of seagrass, which is a driving factor in the Shark Bay ecosystem.

The researchers investigated how this environmental damage affected survival and reproduction of dolphins, using long-term data on hundreds of animals collected over a ten-year period from 2007 to 2017.

Their analysis showed that dolphins’ survival rate dropped by 12% and female dolphins were giving birth to fewer calves.  That phenomenon that began in 2011 lasted at least until 2017.

The researchers were surprised by the extent and the duration of the influence of the heatwave, especially the fact that the reproductive rate of dolphins had not returned to normal even after 6 years.

This study shows for the first time that marine heatwaves not only affect organisms at the lower levels of the food chain, but also might have considerable long-term consequences for the animals at the top, such as dolphins.

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Climate change is a threat to dolphins’ survival

Photo, posted December 14, 2014, courtesy of Ed Dunens via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Carbon And The Dark Ocean

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Sunlight entering the water can travel as much as 3,000 feet into the ocean depths under the right conditions, but ordinarily there is no significant light that penetrates beyond about 650 feet down.  That upper 650 feet is called the euphotic or “sunlight” zone and is home to most familiar marine life.  The “dark ocean”, everything below that depth, makes up 90% of the ocean and remarkably little is known about it.

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