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Building better blackberries

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The Human Genome Project is one of the greatest scientific feats in history.  It was launched in 1990 and completed in 2003.  The international group of researchers wanted to comprehensively study all of the DNA – the genome – from a select set of organisms, foremost of which being that of human beings.  The results accelerated the study of human biology and has led to improvements in the practice of medicine.

Every living thing – animal, plant, fungus, and various single-celled organisms – has a genome – a genetic blueprint.  A recent study by researchers at the University of Florida has done genome sequencing of blackberries with the hope of being able to achieve more efficient and targeted breeding.

Over the past 20 years, consumer demand for blackberries has increased leading to farmers growing more of the fruit in the United States.  The U.S. produces 37 million pounds of processed blackberries and almost 3 million pounds of fresh berries each year.

The Florida researchers made use of a large collection of DNA sequences to computationally piece together the entire genome of the blackberry variety in the study.  The genome study uncovered the secrets behind key traits that could lead to growing blackberry plants with no thorns and increasing the production of anthocyanin, which affects the color and health benefits of the fruit. 

For Florida, the southeastern United States and regions with similar climates, the genetic research holds the promise of accelerating the process to create blackberry varieties that are better suited to local growing conditions, enhancing both the yield and the quality of the increasingly popular fruit.

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Decoding blackberry DNA: UF study paves way for enhanced breeding strategies

Photo, posted September 18, 2016, courtesy of Theo Crazzolara via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Climate risks for apple-growing areas

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The changing climate is creating challenges for some of the most productive apple growing regions in America.  A study by Washington State University analyzed over 40 years of climate conditions that impact the growth cycle of apple trees.

Many growing areas face increased climate risk, but the top three apple-producing counties are among the most impacted.  Yakima County in Washington is the country’s largest apple producer with more than 48,000 acres of apple orchards.  Kent County in Michigan and Wayne County in New York (located east of Rochester) are the next two largest.

The study looked at six metrics that affect apple production.  Two of these metrics relate to extremes:  extreme heat days (with temperatures above 93 degrees) that can cause multiple problems and warm nights (with minimum temperatures above 59 degrees) that adversely affect coloration.

Other metrics included the number of cold days, the last day of spring frost, and the number of growing degree days, which are the number of days above a certain temperature that are conducive for apples to grow.

Changes to these metrics can impact apple production, change the time when apple flowers bloom, increase risk of sunburn on apples, and affect apple appearance and quality.  In many places, nearly all of these metrics are changing in an undesirable direction.

Apples are the most consumed fruit in the United States.  27,000 American producers supply an industry with a downstream value of $23 billion.  Apples are a big deal.

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Prime apple-growing areas in US face increasing climate risks

Photo, posted August 8, 2020, courtesy of Sue Thompson via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Protecting berries with sunflower extract

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Many of us buy blueberries, raspberries, blackberries, and more in those little clear plastic clamshell boxes.  We try to check them out at the store to make sure they are ok and even if are, many soon end up coated with gray mold and other fungi.  It is a problem that is both disappointing and expensive.

Researchers from several Chinese Universities recently reported that compounds extracted from sunflower crop waste are quite effective at preventing rotting in blueberries.  They suggest that the food industry could use these natural compounds to protect berries from postharvest diseases.

Sunflowers are grown globally for their seeds and oil.  The flower stems themselves are generally considered to be a waste product.  Sunflowers are known to be particularly resistant to many plant diseases so the researchers decided to investigate whether there might be chemical constituents within the plants that are responsible for the protective property.

Their research led to the isolation of 17 different compounds known as diterpenoids, including four that have never been identified before.  They found that 4 of the compounds, including 2 of the newly discovered ones, were effective at preventing the growth of fungus on the blueberries. 

Berries were wetted with the compounds and then dried off and injected with mold spores.  Half of the treated berries were protected from the mold.

There is no reason that the method couldn’t be applied to a variety of crops.  There is great appeal in the concept of using a harmless extract from a plant to render a food crop safe from fungal infestation.  The technique holds great promise in preventing postharvest disease in fruit.

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Sunflower extract fights fungi to keep blueberries fresh

Photo, posted August 26, 2006, courtesy of Liz West via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

Energy From Fruit Waste | Earth Wise

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In the Back to the Future films, Doc Brown ran his DeLorean time machine on food scraps.  It was a fun bit of science fiction.  But researchers at the University of British Columbia Okanagan in Canada are investigating the potential for using food waste to generate power.

Food waste is not a candidate to replace solar or wind power, but it could be a source of energy for powering fuel cells.  As it is, food waste represents a sustainability challenge because of its detrimental impacts on the economy and the environment.  Organic waste represents a significant fraction of the material in landfills and contributes to methane production, air pollution, and other harmful pollutants.

The UBC researchers focused on fruit waste, which is abundantly available in agricultural regions.  They have devised microbial fuel cells that convert fruit waste into electrical energy using an anaerobic anode compartment.  That is a chamber in which anaerobic microbes – ones that don’t need oxygen – utilize the organic matter to convert it into energy.  The microbes consume the fruit waste and produce water while generating bioelectricity.

It is not like the Back to the Future time machine where you can just toss in scraps of whatever is on hand.  Different types of fruits provide different results when used in the microbial fuel cell. The process works best when the food waste is separated and ground into small particles.  There is a long way to go before the technology could produce bioenergy on a commercial scale, but there is considerable potential for doing something useful with something that is currently worthless.

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UBCO researchers aim to energize fruit waste

Photo, posted July 24, 2011, courtesy of Andrew Girdwood via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio

A New Problem For New York Apples | Earth Wise

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New York is the second largest apple-producing state in the country, trailing only Washington state.  New York averages nearly 30 million bushels of apples annually from approximately 600 commercial growers.  The apple industry supports 10,000 direct agricultural jobs as well as 7,500 indirect jobs involved with fruit handling, distribution, marketing and exporting.

Thus, there is considerable concern about the recent discovery by Cornell plant pathologists of a new fungal pathogen that causes bitter rot disease in apples.  They also found a second related fungus that is known to cause rot disease in other fruits but has now been found for the first time in apples.  The study was published in early July in the journal Scientific Reports.

Both of these pathogens belong to the genus Colletotichrum, which contains 189 species of fungi that cause devastating rot diseases in multiple fruit crops, including bananas, strawberries, citrus, avocados, papayas, mangoes and apples.

Unless protective measures are taken in a timely manner, apple losses from bitter rot in New York state can average up to 25% per year.  Some organic farms have lost essentially all of their crop at times.  Bitter rot also can destroy up to 5% of marketable fruit in post-harvest storage.

The Cornell study of samples from eight New York counties found both the Colletotrichum chrysophilum fungus, that had not been found in apples before, and a newly-discovered fungus that they named Colletotrichum noveboracense, after the Latin name for New York State.

The researchers plan to work with other plant pathologists and apple breeders to identify possible genes that confer natural resistance to Colletotrichum fungi that can be bred into apple cultivars.

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Scientists identify new pathogen in NY apples

Photo, posted October 12, 2018, courtesy of Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Narwhal Tusks And Stories Teeth Can Tell | Earth Wise

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Teeth and particularly narwhal tusks are getting some unusual press recently when one of them was the weapon of choice to fend off the London Bridge attacker, which was a good choice according to Harvard dental researcher Dr. Martin Nweeia.  Turns out that narwhal tusks have some pretty amazing physical features.  They exhibit both extreme strength and flexibility at the same time.  The narwhal is known as the unicorn of the sea, a pale-colored, medium-sized whale found in Arctic coastal waters and rivers.  In males, the more prominent tooth grows into a sword like, spiral tusk up to 8.8 feet long.

Changes in the shape of teeth over time can tell us about climate change. Adaptations in horse teeth 55 million years ago from North America were observed and caused by changes in climate, favoring different food sources.  The horses changed their diets from fruit to more favorable grasses and their teeth changed in response. For this same reason, the teeth of elephants adapting in different environments of Asia and Africa have different tooth forms.  Both eat plants but Asian elephants, with more ridges on their teeth, eat larger amounts of grasses while African elephants, with wider spread ridges, eat more leaves. 

Teeth have been used to link land mass theories like the Bering Land Strait Theory, hypothesizing that North America and Asia were once one land mass. The teeth shape and form of people on both sides of the Bering Land Bridge shared a common “mongoloid dentition” with unique features. And so, can the narwhal tusk tell us something about a changing Arctic?  Scientists have discovered that the narwhal tusk is a giant sensory organ that is able to continually monitor its environment and has the ability to detect ice formation, and melt, both capabilities helpful for surviving in a changing Arctic.

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–Earth Wise acknowledges script contribution from Dr. Martin Nweeia of Harvard University.

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Fossil teeth reveal new facts about a mass extinction 260 million years ago

From the Horse’s Mouth: Teeth Reveal Evolution

Photo, posted April 3, 2019, courtesy of James St. John via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Bananas In Danger

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For a few years we have been talking about the precarious position of the global banana crop, which is almost entirely based upon a single cloned cultivar known as the Cavendish banana.  The banana you buy in Rome is identical to the one in Rochester.  And therein lies the danger:  if a fungal blight can kill one banana shrub, it can kill them all.

For decades, a fungal disease known as Panama Disease Tropical Race 4 has been wreaking havoc on banana plantations in the Eastern Hemisphere.   Even though it was first identified in Taiwanese soil samples in the early 1990s, the destructive fungus remained confined to Southeast Asia and Australia until it was confirmed in both the Middle East and Africa in 2013.  Experts continued to fear its eventual appearance in Latin America, which is the epicenter of the global banana export industry.

In August, Colombian agricultural authorities announced that laboratory tests have positively identified the presence of Tropical Race 4 in the Caribbean coastal region and declared a national state of emergency.

The infection of the banana plant does not produce bananas that are unsafe for humans.  What happens is that the infected plants eventually stop bearing fruit.

Cavendish bananas are a prime example of the dangers of growing crops with limited genetic diversity – known as monoculture.  It leaves food systems dangerously vulnerable to disease epidemics.

This has happened to the global banana crop before when the predecessor to the Cavendish banana – the Gros Michel – was mostly eradicated by another fungal outbreak.  At the moment, there is no ready replacement banana to bail out the industry, but scientists are desperately trying to breed one.  In the meantime, the world’s supply of bananas is in real danger.

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The banana is one step closer to disappearing

Photo, posted July 9, 2009, courtesy of Dabin Lambert via Flickr.

Earth Wise is a production of WAMC Northeast Public Radio.

Produce Stickers

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The fruit and vegetables in most grocery stores these days come with little stickers on them with a numerical code identifying the produce for the cashier at the checkout counter.  They are quite helpful for the cashier but a real irritation for the customer.  Half the time it is difficult to get the labels off the piece of produce and sometimes we don’t notice them at all and end up with a little paper sticker in our salad.

[Read more…] about Produce Stickers

Light Pollution And Early Spring

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We have talked about the impact of light pollution on our ability to see stars and the Milky Way.  We have also discussed its impact on our circadian rhythms.   Recently, scientists in Great Britain published a report on the relationship between light pollution and the timing of when trees produce their buds.  The results of the study suggest that light pollution is causing plants to jump the gun on spring.

[Read more…] about Light Pollution And Early Spring

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